Scaffold Ga0335022_0000329

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0000329
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27358
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012672	Metagenome / Metatranscriptome	278	N
F036698	Metagenome	169	Y
F057881	Metagenome	135	N
F066704	Metagenome	126	N
F075866	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0000329_10864_11388	F075866	N/A	MAEFDFLEDFGITTQEAEKPKTAYDRFITGLSTQLATEFRDYTKKVAQNTGGLAASIIPVPTGLLSFRLEADYYYPFVDEGVNAVGSKNYGSRFSFNYPGVSHNMATAISQWKGLDMSHAYAVSYKIKQRGLRPKRITENVINDDVLNKIANDLAELTGLMFEINFLKNGSNNI
Ga0335022_0000329_11455_12168	F057881	N/A	MKQLDIKLPTTIADCSPEQMTKWLMMADAIKEQKEEDITQFLIFQCQLLSIFSGESINKIKNSDISSVQEASNHLLKMLSSYQYTEPKEFITINGKEYRLEKNFSHVATGQIIDLKLIEDISQDPCQALAIMYLEKGMEYCQEDDRGRLLNPNDNRYHVFKEHFPGDEFLNFFSFFLHYSKKQKNAILGIQMVRLNMQMSQMNQELKIQNGSLGPLSYIDYQKKWDSVWEKLHNSLM
Ga0335022_0000329_13364_13762	F012672	N/A	MAYSDEFIIHLEELAHIYIEECLTHKKEMISNKGDIVKVLDRHIPTIDYFLRIWIPIVRKEQSIVRDTYYRWLDSDDKLKSDTIKKIDNLFKGLAIDIVGNEGKGIFYAKNRLGMHDRQQLETKNVEKFDFE
Ga0335022_0000329_16625_17125	F066704	N/A	VHFWKTEAYIIANKITGGNPISRDLVSHVYLLVCELNIKQDDLPRVFARYAYNQYKWRDSTFNKQYKLHEELLDINIQSEDEYYVTEAQQLLDAYLHQSPTDDQKLFTKEITKMHLMGMTYREIRTLTGISLDTIHLAIKQFKYDLSDYNNNANRISKSIPELQSP
Ga0335022_0000329_25315_25488	F036698	N/A	MKATHRIWLEDSVEELGGFWWYCYLDHNGCLQDEKYPDDLPETPQWYINNGYIVEEL