Scaffold Ga0335022_0000004

Overview

Basic Information

• Taxon OID: 3300034095
• Scaffold ID: Ga0335022_0000004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 164904
• Total Scaffold Genes: 248
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 181 (72.98%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027415	Metagenome / Metatranscriptome	194	Y
F042300	Metagenome / Metatranscriptome	158	N
F044442	Metagenome / Metatranscriptome	154	Y
F048265	Metagenome / Metatranscriptome	148	Y
F068427	Metagenome / Metatranscriptome	124	Y
F070854	Metagenome / Metatranscriptome	122	N
F086585	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335022_0000004_100439_100708	F027415	AGG	MVLGKLKGMIMNDNVFVSCVTLAIVTLIGSITFYQYSELKSVERNVESAIVKGIDPVAVRCAYANQSDVVCVAYAASHQQGISTPKSSK
Ga0335022_0000004_111940_112158	F086585	GAG	MTDENLIEISRGVDSYITTLLSRYEITPLSLAAILMARAMVLNKEAGSTEDFLKLLSSISRDPPMQKNEKVH
Ga0335022_0000004_117686_117895	F068427	GGAG	MNIKDYQMEPKKPLSFEEWKGNIAPQYQGEKLKAFDRLHNVDYKKEFDEMLQREYAEYCDNLNGNWLLR
Ga0335022_0000004_124762_125481	F070854	AGG	VKKFAILWLVLCANAYADVSFGTGEAPDCELAKAFAVSDAIERYAEKEFEVKKQQICRERNAEGVDCEYIKKTEVESAGTLKRVITEKIKPKKSKFVDTCVVEVKVEIEPSRQLAGDIENASNIAVNGERYKFDVITKEPLYVYLFSVYGDKMHQMYPYDGIKSNLIDGKLVLPNGIWWNADIMSNDPQSKDTLMAIFSKVKITFRSSMTRDEIYRQISSLPINARRVVYHNFVIKRRI
Ga0335022_0000004_161655_162383	F042300	GGA	MPCNFEFLENANYDWMDLLNFHERPFRATFIPSKVWKDLDNYCNDSKGLSNYFRKWKTKVEFLPQKSKAKMYDNYVAVGGEYGPDERQCCIQIYTTEFDRFPFTYDTWNKFKYRIMQTQMHELIHFMQFDRRGDEWSNYVVPYKKVKHEKKNIERRYLSEFDEIQAYAHCVLLDFKIYKPSISTEELINRAKNSKDSSTLNYILKAFNYDYRNNAAIPKLMQQIAKWDRKYQRTIRASRRPK
Ga0335022_0000004_19913_20401	F044442	AGGA	MLKFANLSLSQKRFVVAVLESNKQYKKDPQITLKECAAIYYTIRDQRTGAKGEKIGYPNWLFNKNKVERGVYQLPIPTDVELSAYAKELAEKNTPKVAKAKAKVAKLAKAKTVKVKAPATTAVAKEDKIEVSRLQKIVDESVEFGDDTEDFNAILRENGITV
Ga0335022_0000004_36100_36528	F048265	GAGG	MAMTITTLKNTNQETVIHFASSAAESGTITIANLTASTQARNADTPAVNIVKWQVTGELASKVNILRNSKIVIASAPENAPYAELNAWGIPLTNDNTFDIVITNGAAKDVTGILVLRKTAGWSTKVEEATYGAYDNPAVVGS