Basic Information | |
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Taxon OID | 3300034094 Open in IMG/M |
Scaffold ID | Ga0335014_0161483 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1088 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Anthocerotibacter → Anthocerotibacter panamensis | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014956 | Metagenome / Metatranscriptome | 258 | Y |
F021732 | Metagenome / Metatranscriptome | 217 | Y |
F041648 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335014_0161483_134_391 | F014956 | GAG | MNIQEFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKYFVSGKAIHYNDEIDWNAISDHKKSLWYDSQNFQINMGHEYSKRQG |
Ga0335014_0161483_388_738 | F041648 | N/A | MEALANTLTDNALIRYYELRVKYLEGEQERLRNEARADYLITLDFWIYAQRIIEVYVMFHKDANHEHYLDMIKTILKNLEAHDEKALDTAINRLRLEVITRCNEAIIKCETIRENK |
Ga0335014_0161483_763_1017 | F021732 | N/A | MNITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWTFEPEDIDLSLYPVINTNNLMPLVDENEMDWVIIKN |
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