NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335014_0034734

Scaffold Ga0335014_0034734


Overview

Basic Information
Taxon OID3300034094 Open in IMG/M
Scaffold IDGa0335014_0034734 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2697
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008236Metagenome / Metatranscriptome336Y
F008812Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0335014_0034734_1655_2017F008812AGGAGGMIQWVGILLTVAGLVYTGVKDYQKGDIKIPTVQKHLTPVKYPIQYCLMAYDPNLDKVFYLHENGLWYDYAPEQRRYAASPEVRSGQNQGQATVGGGYGSQRTPRYAHGQSPQATAYPSRY
Ga0335014_0034734_2375_2680F008236N/AMNVYASVHDDKDMGEAMAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRKALPKLVVLNGAKFVTCPEIRRGRATITCTGTKDSISCDMCVKGLANVLFPAH
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