Scaffold Ga0335014

Basic Information
Taxon OID	3300034094 Open in IMG/M
Scaffold ID	Ga0335014_0002208 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034094 Open in IMG/M

Scaffold ID

Ga0335014_0002208 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11886
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11886

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F094990	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335014_0002208_1227_1820	F030677	N/A	MPTPAEIQKNLDALYEGWTSKFTALYGPVRELKRIMFKRIFGTGSTGGTNTAGDKLPSVPYKTTPIYVSPRTLASAPSRFKVGKPPEGETTGKPIKSLYFPDGYAQLKQETSRKLPLELTGRLKGGFLSQEVITEGLTAGIGLPDSEKEKAQGLQFGNGKRFKGYGPIFQPTPEEQAEMLEDHAAELVQQIINAMNK
Ga0335014_0002208_179_1225	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRSFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVLSNYANVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIDAANVNVPVLIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKMDIAIVYESDINTVKFTPKRGTCTSCGGGIKESHICPFVDAIGIELTTDGTNVLTSKSSKYTTGMSLTYNVNCDRQVWLCSVGGTMALALAYATAVEIYNYALTISPNQRVNTTVIVNRGSKPFATADAFEGIVAARDIAATRYSEDLGATLQNMRLPDDTHCWDCRKNMKYVTALP
Ga0335014_0002208_9242_9865	F094990	N/A	MNSIAKITIPIEKLYQSINSPETLNAQRLTANIQPIESPNQYTAASNAIAQVNSAVKAIQDARKMVTGPLDAYKKELMRIESDATEPLQAFIASTKAEMLKYTAELNRKQQEEQRLIQEQASSMAALTDQLAEVSIQHSHIKGIRTIRRTRITGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVTAIAGIEIYEEQIQTITR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335014_0002208

Overview

Ecosystem & Geography

Associated Families

Sequences