NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0149872

Scaffold Ga0335012_0149872


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0149872 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021716Metagenome / Metatranscriptome217N
F030673Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0149872_2_697F030673N/AVNLAVRKVRSFAQERKKHIAPKMLVASVTFDLTHIFTLVFTSLLYQKAGIEKTIISTVYNGEKIQSGDNYLLPGIAEITWRQAENSCFHQKAKILTVEKNMDMRKIMTDLEITTVWVGVYKSLTMDVFVDDQDKSLVTTTDNDTIDHSALNAFSFAETQAIILRKTDTDLKYETVLKTDHHRCICIQKIPFPRRKSDILGLKTLQDNLAQEISLLTDTVKISFSKIERSLLT
Ga0335012_0149872_785_1270F021716N/ARLFQALKRIPGYGISFKVTCLCVRGSRFADLFLPQTVNKDDFLVVIPFGNDLHIRRFVRFDSDLRVFHLNRFVPYPDEYWNNLFAQLQARLASRNCKIRVINNFYWHLCCNAHRHKGWLSYQTKINKKIQDLFENTSVKVIDNRLLLDDHRILKKNLSRYR
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