Scaffold Ga0335012_0121309

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0121309
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1446
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F027179	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0121309_1052_1240	F027179	GAGG	MKMLYMADGLFLYKTDDGYVVKDQNNNILKESKTSTTCSNYITKTLESRRSAEREAKRILAT
Ga0335012_0121309_1237_1428	F002406	N/A	MENLKWIRAMSDRLRDELSSEYDDDTKDLIIRAFMQGLHQQPAIVEELKSSSLIESDYFEDAE
Ga0335012_0121309_810_1055	F002398	GAG	MIPAILFTLINLNPINNFVSLKTYISENAKIHCKVYFINEDLPDFPRVKLIEGSRVDFFKYLDTIGIEHTQVGSYYFFTRK