Basic Information | |
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Taxon OID | 3300034093 Open in IMG/M |
Scaffold ID | Ga0335012_0085746 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1774 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007690 | Metagenome | 346 | Y |
F042337 | Metagenome | 158 | Y |
F092051 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335012_0085746_127_444 | F007690 | N/A | MLTIVNIDKLVNQPIWDGWEVNDIYKGDHNDTYIFELVKRKPLPMHNGLCTIMLERTGHTHSNRLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL |
Ga0335012_0085746_1359_1601 | F092051 | N/A | MKSFKIRENRILIDGVLYGPTPTDVKIKGKVGMIQSIGVPNKGQFFPYSGTFIDDTIVVTEDSTGIVEETKPIKKTRKTK |
Ga0335012_0085746_550_894 | F042337 | AGG | MELVIEGLDKLIWSTYVQRKISDIHIDKRGRYSNATSYVFTFPSIDGSIEGWNRELEVYLCKFPDGSGRYELFVMGLHGVTCDYLELKQIRDIDIFQAHIISVMNRAKTYWETL |
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