NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0085746

Scaffold Ga0335012_0085746


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0085746 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1774
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F042337Metagenome158Y
F092051Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0085746_127_444F007690N/AMLTIVNIDKLVNQPIWDGWEVNDIYKGDHNDTYIFELVKRKPLPMHNGLCTIMLERTGHTHSNRLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0335012_0085746_1359_1601F092051N/AMKSFKIRENRILIDGVLYGPTPTDVKIKGKVGMIQSIGVPNKGQFFPYSGTFIDDTIVVTEDSTGIVEETKPIKKTRKTK
Ga0335012_0085746_550_894F042337AGGMELVIEGLDKLIWSTYVQRKISDIHIDKRGRYSNATSYVFTFPSIDGSIEGWNRELEVYLCKFPDGSGRYELFVMGLHGVTCDYLELKQIRDIDIFQAHIISVMNRAKTYWETL

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