NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0060308

Scaffold Ga0335012_0060308


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0060308 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2177
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y
F042333Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0060308_1080_1250F002162N/AMPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFQLTRVYTAVPSIFKGTGWACKDG
Ga0335012_0060308_1250_1423F007469AGGAGGMADMIMIDGSGLTATFTDNGVRVEPSTIVCDTCNDDRLLHEGDLLRCYSCHSINRIP
Ga0335012_0060308_1424_2074F004599GGAGMMAFNLADYEDVATLNKWFISNFPSGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGARESYIQNMKKFYVEDTATSALGRAIIILKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQIIEMALRKSFADDAKSTSEPTTWSVGDVAEALSNKPKQQECAHGLMILKEGTAKTGKPYYGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0335012_0060308_851_1036F042333GAGMDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVIRCNQCGSWQFVDQKCHTCKLIGA
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Institute for Fundamental Biomedical Research
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