Scaffold Ga0335012_0045739

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0045739
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2544
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F019136	Metagenome / Metatranscriptome	231	Y
F062456	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0045739_1561_1812	F013759	N/A	MKVEFGMSVFSKRETLLGIELTTHNGIVASEDALYEQRVVEFSIGIIIAIFTIGFLSKGEKLDTPDMDNLQRAMKSFESEMDK
Ga0335012_0045739_2002_2283	F019136	GAG	MIGEVTETQNEYCFRVGYNKTPYIIKIFRAGTIGDEYEMVLRDGADITQYGREWIAGRKLKSKELTALIFEALIVKFKPKAQTQMNNNINYFT
Ga0335012_0045739_884_1423	F062456	N/A	MVNRTQALAHNDTKDREVAKDFLEQNKWYGITMGGEYDLDLEVHEFNRGCDIEMINYGMDRFKQHNHFRIPVRKQKYWSNLDTYNDKNNLARINKYKEWYIDYIQFLNNDLDELLWYDYKLIKEYINNQYTDNTLKKQWSERERTFITIPYEIGLKQIKHYKKMQDGKWWIVRHSNNNQ