NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0032911

Scaffold Ga0335012_0032911


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0032911 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3045
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014137Metagenome / Metatranscriptome265Y
F042325Metagenome158Y
F049619Metagenome / Metatranscriptome146Y
F050949Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0032911_1168_1491F042325N/AMLTLENLQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFSSTLNEWKMYNDQDNGYTILTKGYLQFKMFVGILGGQLHSFSN
Ga0335012_0032911_1812_2129F049619N/AMLTIQNINKLNQKTLGKKNFYVARIEEQVSIDNISLTASEHKYKFELSNKQYAITVTLDRTPAQYNALGTYFTLHSSTGHKLYISKNEISNIDIFIDKLRFVALG
Ga0335012_0032911_522_791F014137GGAMLTIKNIQTIIGETYNEVFNIIGVKEEKSYYEFTLGYATVGKPRYETILLHRKQTDNGMYVMEYNSKTLWLNTNEFDTIDKIIICMQTI
Ga0335012_0032911_834_1157F050949N/AMLTIKNRGYLISDSFYDKMGMYWVVDKIIDDTDEYLILIENPKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKIKTYIPIETISDKRLLIKRMTEMIDNSYDI

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