Scaffold Ga0335012_0032911

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0032911
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3045
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014137	Metagenome / Metatranscriptome	265	Y
F042325	Metagenome	158	Y
F049619	Metagenome / Metatranscriptome	146	Y
F050949	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0032911_1168_1491	F042325	N/A	MLTLENLQKIEGKKIHTPHAHWIVMGIEERKHDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFSSTLNEWKMYNDQDNGYTILTKGYLQFKMFVGILGGQLHSFSN
Ga0335012_0032911_1812_2129	F049619	N/A	MLTIQNINKLNQKTLGKKNFYVARIEEQVSIDNISLTASEHKYKFELSNKQYAITVTLDRTPAQYNALGTYFTLHSSTGHKLYISKNEISNIDIFIDKLRFVALG
Ga0335012_0032911_522_791	F014137	GGA	MLTIKNIQTIIGETYNEVFNIIGVKEEKSYYEFTLGYATVGKPRYETILLHRKQTDNGMYVMEYNSKTLWLNTNEFDTIDKIIICMQTI
Ga0335012_0032911_834_1157	F050949	N/A	MLTIKNRGYLISDSFYDKMGMYWVVDKIIDDTDEYLILIENPKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKIKTYIPIETISDKRLLIKRMTEMIDNSYDI