Scaffold Ga0335012

Basic Information
Taxon OID	3300034093 Open in IMG/M
Scaffold ID	Ga0335012_0020293 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034093 Open in IMG/M

Scaffold ID

Ga0335012_0020293 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3951
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3951

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F023848	Metagenome	208	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0020293_2_637	F028717	AGGA	MNEDTFVGNEQAPEVMQDQATGNNTEQNVNAGAIRKSTTNSILNALSNASGQNFESVEAALSFMARTSAQQTSGGNAQPVEQQNTDRRSNRVTNNDLAEQFNRLQQDLSMKEQKLRERDLDSEIQRAMGERFDSDLLDYALTKVKSNIEWYDDGTYAIVDNKGRERYGIDGSPLTISGLVNEVAQGNPKLLRQSSGNSGSGLRPGQGSFAGA
Ga0335012_0020293_2835_3896	F023848	N/A	VWVADEAALYTSETLQEITNRLRPKVGQPDTQGRLIVISTPNGAGPLYDLFKMAVEMPDKYIVRHLNYEQMRSGNRDFIDEQKRILSPLKFNQDYMCQWESVADQFFYTWDRHKYCREIVDKQQDLYTFHDFNKRVMCATVAQVTNAGKPDGTIEILKSYAIPDCGTEGLAQAIRQDFPRRRINAVIDMSGTQANRDTTSPFGITDRVLLEKYGFTIVNSRKSNPLITDTDNTSNGFINRGGLVVDPNDKKLLEALQTYHFEDGTRKKLVKYTEQKYAHIDGLGDSIRYGIHHLFPIHHHTIGISEYVNSDQRLSRAGILGTDYMPHSPLYPGGPTWEEILKGDQEEDFMSWN
Ga0335012_0020293_704_2329	F026558	GAG	MNNSDLLKKNPVYNVIYEQMLAYQLAYLGGYSFKQYVRKKRPSEDSNLWIDLINNTIAQPICRYIVDTINDVLFDPGVKRNLQFCTPSGSFINPKNAEWADLFLLDADLNNSSLTAFMEQVGDLTSIYGHCWIAVDMPQAGDGTLGRPYTVAIQPLNVWDWEFDYYGGRPILKSVKILEMEDENCYYIKCYHLGDATNPSYYKSYEVEKNANTIQLNAPAKLIGEGVFPLGMSIPVFIAYGRRDPRRIDLGVSDIDSATDAQREHYKLECEAYSAVQFAHTIIRAEPGVKVPVHSGAIVRATEGQIEAITIDTGDVLTIIKKQDNILEQIEALTGLGGLRNTKNQIASGVAIIEERKQLHRLAKAKARLMESAEETILTYAARYMGMRWAGEVRYNTDYESHDTNYRLALIKEAKALSPEDPVINALVNKEIIGMLAPSTQIADYEQLYIDTIQDPALKGLMTETNQEVLSRDLMPSMIPVEREYEDDDSNMEEASEDAGGDDGNATLLGGAGTPITNLGITYTPQQAIAVQLTGGVNTG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335012_0020293

Overview

Ecosystem & Geography

Associated Families

Sequences