Scaffold Ga0335012_0019707

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0019707
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4012
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011843	Metagenome	286	Y
F034899	Metagenome / Metatranscriptome	173	N
F035676	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0019707_1_243	F034899	AGG	MICPIVIATVKGHGLAVMLESIKQYAPECPVYLRGPESVIDRFDADYKLYGQPKNFGDDYNEIIEMALKDWSSCIVANDDI
Ga0335012_0019707_2810_3019	F035676	AGG	MSGKEMKSNFVNSHLRLNGNCYAHKLQLCNKCLRQKPPEGGVEMSATRWICASCWTNRVTSQNLKEMAK
Ga0335012_0019707_3177_3338	F011843	GGA	MNIVLLTKVRQLFNVDYVPRSTNRHNQRQYIKSIRLLGDKWLIHHSNKIQKIQ