NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0017880

Scaffold Ga0335012_0017880


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0017880 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4236
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006463Metagenome / Metatranscriptome372N
F009004Metagenome / Metatranscriptome324Y
F009958Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0017880_1358_1522F009004N/AMKTEFNKVIDFLETQQQEDKQNTNQLHLIIQTLCTFLDDEQLQEVENLFNQFKK
Ga0335012_0017880_601_885F006463N/AMTSGTTYEQLDWWQRQWRGSFDLGLYLEICRIKKNEQIKFKPMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK
Ga0335012_0017880_882_1214F009958N/AMKNRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEFAFIELDVDVSEKWLTETDDDLQPHVLGVRILEDLRLEMQEAINSDLVHYNFWEWKTSNDDSNYTFYHEL
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