Scaffold Ga0335012_0017852

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335012_0017852

Scaffold Ga0335012_0017852

Overview

Basic Information
Taxon OID	3300034093 Open in IMG/M
Scaffold ID	Ga0335012_0017852 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4239
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005697	Metagenome / Metatranscriptome	392	Y
F021065	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0017852_2667_3305	F005697	GGAG	MGFLDNYEASRERLERWLRTYPTGRIETRIVEFSAEKGYVLVEAKAYRNDTDLQPAGVDYAYGYQGAYQQNMKRWFVEDSVTSAIMRVQQLVMGGAERSTKEIMEQVETTPAKVANTDTTDYWTTKFGDMPAAEQTGIPSLGSSMEEITKQLGGELVKEAPKCSHGHRVWRTGTSSKTGKDWANYSCVGRKPNQCDPLWYVFTSDGTWKPQV
Ga0335012_0017852_3495_3989	F021065	GGA	MKVTLTRDEEFICHEAAIHLAKQNKDYWQTREGGYTKDKSLHELIAQDAESIGSEWVVAKYLGFPFDPFEQKGKTKADVGSHFEVRWTKYVAGQLIIHEYDRTDDVAILVTGESPHYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNRSV

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