Scaffold Ga0335012

Basic Information
Taxon OID	3300034093 Open in IMG/M
Scaffold ID	Ga0335012_0016952 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034093 Open in IMG/M

Scaffold ID

Ga0335012_0016952 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4354
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4354

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018175	Metagenome	236	Y
F020355	Metagenome / Metatranscriptome	224	N
F049636	Metagenome	146	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0016952_2086_2934	F018175	GAGG	VEKLPKNQKEYYHNKIREFEKSTDKFMNTKNVNKYYDYTIESAGYNLPAAMNMMLKHGCYIYHDLLTEEDSRSNGTNWLKFGYANANGKTYKYYYETKQWGQEILKNDLDIYKNKTWKVAKLDNTNCPYLDPGEDYLPYAIENKHIGSNFDDFLKTNNIELKRDINWAVKMLAAGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWVIVPNKTFKDVLDDLYAGKTIRRKSWHSDWGVGKYARYGKLIYLDLIANDWEVVDVVAEIDQVQKDIKDGKI
Ga0335012_0016952_3_1352	F020355	N/A	LTGEQVFFDNFRDFKPIVQMPQKMDVVEQRFGRNWQYWNKSDVILRWYENDKWSFFLDDLDTSASTVFLMGSHFMDTIYDGGTLGQSSTPSHVSNGVMLMSPKKTANIAGEKILHVTFEVDPHFSGRRWCDVLLLPAGETVYSGKAADKIAMNTKSGKLFRWAIGAGHHEINVDTGYNTDGSRKSFRVPVKFADRGSIYSYPAPYRSVNHLTEYKVGTFVANSVVQNGNDVNVKLSSKFFDSNKFPAFNLESNYSPKSGWIRFAEFGGAAEYEWTPGTFKMIDDIDFNPNNWWIKETSKASLNKLMDAYSSNRSGAIIYRSTMNAISGKYEGEIFFRPSVERRDYPLNRTWQGLDRRVQFDLYVSKNRVVVVEDGYLVADSPLPVDFPFEEINVNYTHLIYHTYNEIGEQRTWQPDNSYWINFRPFADERHWDNMGFEVLTGFPNVKLL
Ga0335012_0016952_3592_3807	F049636	AGGA	MTGKEALDKLEDGFTLRRIAWESDIKCRAYFSDVKQVPEYVPDDPEFENYISLFDALDNGEFLMDDWEVVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335012_0016952

Overview

Ecosystem & Geography

Associated Families

Sequences