Scaffold Ga0335012_0004802

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0004802
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8220
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F033349	Metagenome / Metatranscriptome	177	N
F070031	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0004802_141_677	F002909	N/A	VATIDINKLPDALDTYLDDVNQGSLLQQIIVDWWNKKVIPPIWANLDNKNINASSVLRQSFVPGEITKTPTSINTILLAEDYWEFVEYGRKPTRNGHIEGTPYLWQSIKEWMAFKGIKPPQTMTYDSMAKAIANKIHRRGTKAQPFLEDAFTESIQMELVNELNARFGDLIFSEDIKL
Ga0335012_0004802_7629_7940	F070031	N/A	MKIIDYRRFNQLRTKAKELPMYKEFISLVEKDKKVQCYNTLQDMLLDAFKWDKTPQGHEYWQSVYDSIVIADHPKCPKCNQLGKVWLLKTVNKHKCNKCKITF
Ga0335012_0004802_912_1169	F033349	GGAGG	MIEATINGWILTMGGDRYVYIDKQVDDYLLENHFDELKPYLIKRDVYFGGCVETNLVGIETERFFYLEPDKFTVLFMLGHKTNFL