NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335012_0004802

Scaffold Ga0335012_0004802


Overview

Basic Information
Taxon OID3300034093 Open in IMG/M
Scaffold IDGa0335012_0004802 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8220
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F033349Metagenome / Metatranscriptome177N
F070031Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0335012_0004802_141_677F002909N/AVATIDINKLPDALDTYLDDVNQGSLLQQIIVDWWNKKVIPPIWANLDNKNINASSVLRQSFVPGEITKTPTSINTILLAEDYWEFVEYGRKPTRNGHIEGTPYLWQSIKEWMAFKGIKPPQTMTYDSMAKAIANKIHRRGTKAQPFLEDAFTESIQMELVNELNARFGDLIFSEDIKL
Ga0335012_0004802_7629_7940F070031N/AMKIIDYRRFNQLRTKAKELPMYKEFISLVEKDKKVQCYNTLQDMLLDAFKWDKTPQGHEYWQSVYDSIVIADHPKCPKCNQLGKVWLLKTVNKHKCNKCKITF
Ga0335012_0004802_912_1169F033349GGAGGMIEATINGWILTMGGDRYVYIDKQVDDYLLENHFDELKPYLIKRDVYFGGCVETNLVGIETERFFYLEPDKFTVLFMLGHKTNFL

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