Scaffold Ga0335012_0004028

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0004028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9032
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F009397	Metagenome / Metatranscriptome	318	Y
F011368	Metagenome	291	Y
F023573	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0004028_5632_5844	F009397	GGAG	MTTYLLPKARNTVTGQTVKTQDLTGTRFALNQHRLAQDMADQTAAKLSARTGQSWQGFVEEYQPSVRDNS
Ga0335012_0004028_5975_6187	F023573	N/A	MLTLISTTGEYNSTVVVSGPVGVIRICDLVWCPADRLDLLEIYYWEAHAVLQGAYHCCFSLPGKVTLLKP
Ga0335012_0004028_6420_6689	F011368	N/A	MNHSLHHRDIAGHALNPGDHCLVTEHNRLILARVIKCYPASNGVQLQPLNSSAGGRRSRPNQKLIRRECYNVYRIADTEITMSILRGAV
Ga0335012_0004028_7995_8378	F000354	GGA	MAKTNYDAFRSFDINECCDHFDSEKQSNWKKIGKFIVADGQDYAHIMETEFDFEDTGSGEYEAFEAGVKYALTKMNIAFEAAGLDLEVKQADLVESMGYMLVLADDEPEDFVKRVLKKPVLHVESWV