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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034093 Open in IMG/M |
| Scaffold ID | Ga0335012_0003966 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9103 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.76%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001808 | Metagenome / Metatranscriptome | 631 | Y |
| F005814 | Metagenome | 389 | Y |
| F006463 | Metagenome / Metatranscriptome | 372 | N |
| F009004 | Metagenome / Metatranscriptome | 324 | Y |
| F009958 | Metagenome / Metatranscriptome | 310 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335012_0003966_3134_3316 | F009004 | N/A | MKTEFIKVIEFLEVQQQENKYSANQLHLIIQNLCTFLDDEQLQEVENLFNQMNKSNEKFN |
| Ga0335012_0003966_3439_3771 | F009958 | N/A | MENRNLEFWNKGWELTYEFLGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEMQEAINSDLQHYNFWEWKASNDESNYNFYHEL |
| Ga0335012_0003966_4028_4312 | F006463 | N/A | MKAGTIYDQLDWWQRQWRGSFDLHLYLEICRIKKNEQIKFKEMKRYKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK |
| Ga0335012_0003966_6835_7125 | F005814 | N/A | MELELLSSRINLNHTCLKLEVSIEDIKTKHPNRTDLITSMEQSLHEIKKAMLVYQTLEKEFRATRQINFDLQRINLEQMQEIQNFKRQIELNNIDL |
| Ga0335012_0003966_997_1425 | F001808 | N/A | MGKLFILIISILLYSCSAQYHLNKAIKKGFKCDETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIQYKNVYVPKTRIELKREYKIKVKTIYKDKVVEKAQARAEGKKNQPKGNLNLLFVGVGIGLLLSYLWKYAKKSLI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |