Scaffold Ga0335012_0003613

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0003613
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9570
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F003749	Metagenome / Metatranscriptome	470	Y
F014237	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0003613_5467_5649	F003658	GGA	MNDLRGTPTFACICGCKMFEVTVMWDEETREVGWYDLAQKCKDCGMVTTAPTPIDWMDCD
Ga0335012_0003613_7422_7664	F014237	AGAAGG	MDTFKNVMMRIFAVIAAESLGVIGAGSLVGIEVWQAATLAGALGAARVLEALARFYLADGSLTSEEINAAFAKVDKKAVE
Ga0335012_0003613_9355_9564	F003749	N/A	LVGYEGRASERIRLLEEIEESGDVLTWQDLTTAESRQAIIEQVTFTRMTPPDKRFDGFGGVIEITVRTV