Basic Information | |
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Taxon OID | 3300034093 Open in IMG/M |
Scaffold ID | Ga0335012_0002624 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11178 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (47.37%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024314 | Metagenome / Metatranscriptome | 206 | Y |
F062758 | Metagenome | 130 | Y |
F087107 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335012_0002624_2251_2856 | F062758 | AGG | MADILLSNDDLTVFGGPETISLDLDIGPQGDRGSIIVGSNGNPQDTNVNAAIVQNIQALDIAIDYNPFSTTYKTVFQRVATATGTQWTEMFSLKTNFYSSVKSVTAVASGSYGIITIPPINVTEIYDISGGEVTSENFSVQYSISSPDSAGPVSTTLAVKDLVTSQGFLALPLEIKGVEYDGTTWGPMTGPKTVHLFITVV |
Ga0335012_0002624_5204_5599 | F087107 | N/A | MPIHSSLAFGADPVTMQWSVVRGDTGTLRVEFYEDNEVDYYDTAGWIFRATAYDQSGNVLDALDCEPGEGFVDITAYPSVTKNWGLKYASVVAQLPFDLQVIIPQDIEDTVWTPVIGTIQVLGDVTPGGTL |
Ga0335012_0002624_9476_9643 | F024314 | N/A | MDEELKLTPEQAQAILLFQIEQKLRFVIAKQVEDKFHGSYHDASHDIAQFIRNMA |
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