Scaffold Ga0335012_0002013

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0002013
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12883
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004761	Metagenome / Metatranscriptome	424	Y
F016388	Metagenome / Metatranscriptome	247	N
F054000	Metagenome	140	Y
F102851	Metagenome / Metatranscriptome	101	N
F104779	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0002013_12236_12481	F016388	N/A	MNSTIAKALDLGQRLISLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTSAEISAAFGTKTKKK
Ga0335012_0002013_12642_12872	F102851	N/A	VDELSEEQLEAFTEVIQEAPTEIKQAFEKTIDIFGSKFDDYVPTGSNVPVRTRRTLVVIGSLLTMLPSVHIKTGKS
Ga0335012_0002013_1951_2313	F054000	N/A	MNAYANFLSQQRGNRGRRDMMQQYDKAQPQVVSGYSRRGLVGPNVKSGIFARGLQDFAKQRAQSFGDYDRGIAEEQRGYDLGEAARLEAFKNQLADLEAEKAQTIADAARQLYARRAGAF
Ga0335012_0002013_4458_5123	F004761	N/A	MVRNISDLDTTDLPNSIIDDAVKEAFQRVIVLERRWPKYQETYTFNTVANQRPYTISTIGDIREVISLVDTSSDGSRLTMIPYDNAEDIWLGNTDVPSRPYFYAVWDGQLHLYAKPDGIYPITVRAYRNPVYTWLSTITDPIDCDEWFHILFAYFVLARVYQRQEDPELSAMYLKSFEEGVAMARRDLMKTPSARPLIVSGGRQYPTMRRWLQTLGATLGT
Ga0335012_0002013_5153_5368	F104779	AGGA	MKNAQLSGAYYGEPISGIRPSVEVPGSRQAPPSGPYLGRGNFCAANEDTCTGRKAKGTDYCMGHLRNRGEA