Scaffold Ga0335012_0000348

Overview

Basic Information

• Taxon OID: 3300034093
• Scaffold ID: Ga0335012_0000348
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32235
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (68.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F023360	Metagenome / Metatranscriptome	210	Y
F023848	Metagenome	208	Y
F041183	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335012_0000348_1_669	F023360	AGGAG	MAYVLGGSNNEADGFTTAIANFALRAMHESNGMVNLTNVVTPTQGNQFLVPNFAPITYQDYNPAGAGGNVQGDASEQNPALGQGSITATPAVAATAFDAFYSWTTSFQLAATLGAELGDSFAEKVDQRVAAAFSDFKSTVNNTYYATSADGFDRVLELGAMELVASGVTPSSPAAGFTANTVTQLVRLIKQNFKVARMPGSPVIIIDSNGNDGVIGSTLTRLL
Ga0335012_0000348_31111_31638	F002260	AGGA	MSVPYQRISNATVADIIFYDPAAERRATSLNVVWDPYFKVASQEWLYKLEFGWWTKYCDTVFGASYYTNNQQGQLISAFNPSLLIKDDQTLIRLDTFGAIEVFYESLVTDVSNMNEVDLQNYEFSKNRCQNEWIKALELMNFYDLSGQNPDGPTTKLEENWTADVDYFNNDRRFF
Ga0335012_0000348_31694_32233	F041183	N/A	LVASGVTPSSPAAGFTANTVTQLVRLIKQNFKVARMPGSPVIIIDSNGNDGVIGSTLTRLLSELTGGAVSQSGGSNLSALGNELLSTGRIENIYGCQVMSTTFLSSATRPIAGLGNGAYPVLIGGYFGDSAIFTVIKEGLQIKTGEKPGGLQMWLTGLGYFGSGVGDLRRGGAINIVQD
Ga0335012_0000348_3682_5121	F023848	GGA	MNNRSNIDIPLYGEQKTILADWLTTDKHCIDIVPVGSGKTFLASIALPIFASDPRYHKGKDIIYSAPTGAMIKSLIWEPLKQSCIKYFGLVDGKDINNSELTIKFPGGVFIRCKSAEMRENLRGLNVGVWIADEAALYTQDTLQEITNRLRPKVGQPDTFGRLIVISTPNGNGPLYDLFQTANQMIDRYIVRHLNYLQMRSGNRQFIEEQKRILSPLKFAQDYMCSWDQVENQFYYTWNKHKYCAPVIDNGGDLYSLHDFNKRRMTAVIVQVNNPYKSDGKMEVLKSYAINDCSTEGIAQAIRNDFPRRRINSIIDMSGTQVNRDTTSPFGVTDRIILEKYGFTIINNKNSNPLIADTDNTSNSFINRGGLVVQPDDKILLEALGTYHFEDGSRKKLVKYTEQAYAHIDGLGDCIRYGIHHLFPIMHENTGPDYITSDSRATKRPGYEHLPYSPLYPGGPSWEELMNENLNGSDDYVTY