Scaffold Ga0335010_0156096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335010_0156096

Scaffold Ga0335010_0156096

Overview

Basic Information
Taxon OID	3300034092 Open in IMG/M
Scaffold ID	Ga0335010_0156096 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1440
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005480	Metagenome / Metatranscriptome	399	Y
F023328	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0156096_1232_1438	F005480	AGGA	MATTTTNFGWDIPQSTDLVKDGATAIAALGQDIDTAFVDFKGGTTGQVLKKTSGTDLDVEWGTASSGLT
Ga0335010_0156096_3_1211	F023328	N/A	YRVTIAGVVQTADILSGGTITYGRNDFFEATQPSYCNIELLNKDGASPVVELLDVVIIEVTNSAGSFVKLFTGEISGVYNRLEAAGAGGKPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIERILQETLFIAWEDLSNTQTWDDFTTETWDGYGIQGIDTIDPGRYEVLARTAEIDQAFNLTDETQQSGLGYLYDTTDFEIGYADAERRITNYSDNLIELDANLANADIQTRLQTADIVNSVVIQYDDPVLEEAAQNDTSINDYGLLQEIRRTILAQQLDAQEQAVNFVNFRGTPRTSLESVSVNLANDAMTNTVRDDLLAVSMDTLLYVDNIPVGLLPSGFFEGFVEGWSWNLSRRSLELTMSVSNSIYSTLDVQWEDYNPLTQWQNLDNTTMWLDVI

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