Scaffold Ga0335010_0004945

Overview

Basic Information

• Taxon OID: 3300034092
• Scaffold ID: Ga0335010_0004945
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11405
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007466	Metagenome	350	Y
F032154	Metagenome	180	Y
F047498	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0004945_4797_6044	F007466	AGG	MTQWAPIWRVKIAGVDVTDSVLASLNITSGRRNIYEQAQAGYCSLTLIVFNQAAIGYKINDTLSVEVQDTAAVYKPIFGGSIVDIAVSVSEVGSTAYTQEVTITALGALARLQKALTNGVLTQDFDGDQIYTILSQVLFAQWQQVPAALTWATYDPTETWANAGNTGLGEIDRPGNYELAQRASSRIVIYELVSALATSGLGYIYEDANGQIGYADSTHRTTYLAANGYTDLTANHALGRGITIKTRAGDVRNDVTIKYGIDSGSQVSDRDEASIGLYGELAQIISTTIKHQADAEDQAAFYLALRAYPQPNFDQITYALTNPELDNGDRDSLINVFMGQPIALNNLPVNMSAGTFQGFVEGFTFRASYNELSVTLLMSPAGYSLQAMRWNDVPITETWASVSPTLTWEYATIVS
Ga0335010_0004945_9802_9996	F032154	AGG	MGDFEMIDLRTGDRLRIDKDGTELRYEIDPPSIEWCDTGQHYASKLGGREQGGILWICLMCQKK
Ga0335010_0004945_9966_10484	F047498	AGGTGG	VDLPHVPKEMIKMKITAADEWAIHNRAAQVVFSLDELGTVQRYNNKLNNHERVTEYAESLGAEMVVARYFGLDFDINVSNGKRNADVGKGIEVKWTSYINGSLIIYPNDRVDDVAVLVVGRSPEYFIAGWLPVKMAMQKHFKNSQQESWWIGQDNLNPIEDLVRSSYAATHI