Scaffold Ga0335010_0001172

Overview

Basic Information

• Taxon OID: 3300034092
• Scaffold ID: Ga0335010_0001172
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23634
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F015583	Metagenome / Metatranscriptome	253	Y
F078203	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335010_0001172_13283_13480	F078203	GAG	VNPRVPYSENEAQEAWLWVGRHGPSNSWTASNGTAARMIGRLLEERERLLAMLASRENIQRPAEQ
Ga0335010_0001172_20777_21070	F015583	AGGAG	MRFAFVVFLALAASCAYGQTIVVRGPAVISAQEHATVIARRGTLVHSQCSQTEGIGMGSTPEAARRNCCFFGKKVIVEEGVAYSPVTRRWYAVIRYR
Ga0335010_0001172_23103_23405	F002540	AGGAGG	MQNYGATDQEIALYGNKLNLWQSLALLQAWAPLIAYGQRFVNEIDPYRKSIIVSEAAEWLASKTNATADDQLVRLLADILKTQQGEALVRWCLLQVEGAK