Scaffold Ga0326724_0289368

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0326724_0289368

Scaffold Ga0326724_0289368

Overview

Basic Information
Taxon OID	3300034091 Open in IMG/M
Scaffold ID	Ga0326724_0289368 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	917
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003114	Metagenome / Metatranscriptome	506	Y
F005331	Metagenome / Metatranscriptome	404	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0289368_406_744	F003114	N/A	MNTKSSPQSVLHDIAQIQHMERGTLSVIRQGPDGPYYNHQSYEGGRNVSRYVPSAQVNQIKQAIEGYHRFQELAQQYAQLVVEKTRAEREAGSKKKNRRQNSSWPKTKKSSN
Ga0326724_0289368_744_917	F005331	N/A	MTRFQAEEPNGVAVQQLEVLVRTAIFQPANALVGFLLQQATDRIDAAYQPKPGQQRKG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.