Scaffold Ga0326724_0203013

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326724_0203013

Scaffold Ga0326724_0203013

Overview

Basic Information
Taxon OID	3300034091 Open in IMG/M
Scaffold ID	Ga0326724_0203013 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1174
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019075	Metagenome	231	Y
F082025	Metagenome	113	N
F104296	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0203013_2_361	F104296	AGGAGG	MPNHEDLYFTPDINNPHQKWSVLEDPECPGRRPIIRHYRQPGEKPDVRTSFGFSELSPVLEHYAELNGLHYGRISLGQSEKAFELALDIVQSGLGIVIEGKNWYPAIPIVRDNGFSAVLL
Ga0326724_0203013_549_785	F019075	GGAGG	MRYFQPERALIAREIREERRRELNAMLSQLPQRRAYRVSAPPPPSLEAQFQRSIINMREDVQRAKGVQTTHILRWLRS
Ga0326724_0203013_962_1162	F082025	N/A	MDSNTIFTSLFGGCLKAADKAAAAAINYSKSTAVPGVRKLSRKATLATGHTLVYVGSKLTDCCTDK

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