Scaffold Ga0326724_0132417

Overview

Basic Information

• Taxon OID: 3300034091
• Scaffold ID: Ga0326724_0132417
• Source Dataset Name: Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1574
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F010071	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0132417_1064_1573	F010071	GAGG	MNPLTNLVLSVGETLVHEAGRLLFGVALGKAKDLLDTPELIGTRQLALNRALQRKAVDGALLAGPRTGKEYAKFTLKKGLPTDQRPRTLAVENQPHSVDDFNGVIKEGYGKGEKRLIYSGTGVIKVGGSCQLGKINVHEHAAEKAGFHYDFVAEGVDPHPESFEVNIANG
Ga0326724_0132417_271_624	F005112	N/A	MAALLGLAFWKNSRSYPRKSRPWRLGKAVIDTGLVVLMVIYSPALLLMYVVIWLTSPFKNKIIQVSAAFASILAITHLAGVVFEAVAVFGVFAVDLLSGQVVARMEKRERNKLARAA
Ga0326724_0132417_9_176	F007120	N/A	VVAYYFGLRYFSGRDLGFTPAKKYVRNLAKNLLHTELTAAREAGTTSAATTEQAA