Scaffold Ga0326724

Basic Information
Taxon OID	3300034091 Open in IMG/M
Scaffold ID	Ga0326724_0035954 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034091 Open in IMG/M

Scaffold ID

Ga0326724_0035954 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3850
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3850

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F019075	Metagenome	231	Y
F057060	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0035954_2_2851	F057060	AGGAGG	MPNHEELYFTPDIAKPHQKWSVLEDPERPGRRPIFRHYRQPGEKPDVRTSFGFSELSPVLEHYAAKAGIEYSRISLGRQTDSFGLALALVQSGLGLEIPGDGTWYPVIPWVRDDGFCAVLMREPVPYEEVCHLFGFDIPAAKPSVPKRIKRHLARGRTALFGRQAEVRQLNQYDSVHRVILADGVTSFETAVYHPGPRWPEAWTSGAALTSRRGGALLTGHPVHIGDLIQITGALPTGQIKAHCLVWDVAYDLVVFDIKKELRAWNGQAYFSVLNELHGSPANLDVQTASNLDLAKVRDQKLIQFLSQEFACDVFELMKDDERVKEEIGFYNPDGWVDEEGNLVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLMTVQPQELAGAGVRKYIFPEPFVFDRQGCPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGCRLHHFAEIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPDIVAHWKTLQDYPQVVATPTQAMVIDDGDTLFDRHPEVEPYDDEYVIRMIVDARDGQMGIGCVVNAIVWFNLLWLNRASILAQLRAMEPSPKVLEAIRWMELDLPRSQMPMIASRLEEIIDSIKMNGKSVEWANGVITEFRNTCPVAPKFWWQGGFEGQGRIPRHRLGNYNEPIPVTTAMDVAREEWVEIFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGTLGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVVVEDTLVRIVGSTPNPASWLGIVDVPDGQYRLEHGLSTEDDGEPAPQPATVALPAVNGFEQRLKDITLK
Ga0326724_0035954_3034_3270	F019075	AGGAGG	MRYFQPERALLTREILEERRRELDVVLSQLAQRRADRLPAPPPLSIEAQFQRTIINLREDVQRAKDVQTTHILRWLRS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326724_0035954

Overview

Ecosystem & Geography

Associated Families

Sequences