Scaffold Ga0326724_0017051

Overview

Basic Information

• Taxon OID: 3300034091
• Scaffold ID: Ga0326724_0017051
• Source Dataset Name: Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6673
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F025427	Metagenome / Metatranscriptome	201	Y
F028392	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0017051_1372_1842	F028392	AGG	MFDGFACDKTNSNHLKEDLPMPNTIAVIHLPEALRDGNSALVKLAGKVDSFSLVLHRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRHFAGEGILDFSTDCASGQLEPGDLGKSPQPKRGKLCHQCCFFLGEPEDQVAGIAVTGSPRHLAPAN
Ga0326724_0017051_2_256	F025427	AGGAG	MQPGELEKLLASLGTCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFLCVTVWALNWEKEMTAYFDKAFRQWKKDNDVKC
Ga0326724_0017051_440_760	F016632	GGA	LETFALVEIGSAIGFLASWRNKVLKTKVNFFRQPSNSPSRFDKVLRGKVGRAVTRQDRLRLQLADGLVTLIRKLVQYEAFRQVVRGLALAHSPIRQALRKKGGRTW
Ga0326724_0017051_5554_5763	F019075	GGAG	LIAREFREERRRELNAMLSQLPQRRADRLPAPLPLSLEAQFQRSIVNLREDVQRAKDVQSTHILRWLRS