NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326724_0003016

Scaffold Ga0326724_0003016


Overview

Basic Information
Taxon OID3300034091 Open in IMG/M
Scaffold IDGa0326724_0003016 Open in IMG/M
Source Dataset NamePeat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25129
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (85.37%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010178Metagenome / Metatranscriptome307Y
F021584Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0326724_0003016_8249_8716F021584AGGAGMDPAIDDQFERQYFSYVLDRVVPANAVQDPNQLQILSDADFEWWWVIASRTSNLLKVLMKEQATGRDFIGTTASATAGTGTFNGMQIDNWCGTAQATAMFPLAVPYIMPATRVYTLLFSDTSGAPNTVEVVFSGFKLWPRPATANGGSGSVSGYR
Ga0326724_0003016_8826_9608F010178AGGAGMNPRSNSRYQSRFARCTEIAEREVGRPKLHMLRKNPIVAGQLEYLVQPVYDFYGVAVATALTKQQMFSQPIGAAYTPSGGAAFVKTLYHTNLVQPGMLDAPKKLLVKAVAIVVRSDIAVIDANAFLGTSLAQLLISGKDYWTSLVSKCPAGAGAFMSAWQNTQTLAAGGTNTGSTSNGWPSAQNVATITDPMPQIPGLDAMEPILGQLIEQNQNFSVTIDPTISGVAAYTTIAAAPTTQYVGTGVNAHCYLEGVLARAIL
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