Scaffold Ga0326724

Basic Information
Taxon OID	3300034091 Open in IMG/M
Scaffold ID	Ga0326724_0002425 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034091 Open in IMG/M

Scaffold ID

Ga0326724_0002425 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29895
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (70.97%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

29895

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (70.97%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F057060	Metagenome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0002425_19572_19841	F002761	N/A	MVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRL
Ga0326724_0002425_22108_25293	F057060	N/A	MDPNLRSSRILPIGSMPDTRRETMPKHEELYFTPHLDKPHQKWSILEDPECPSAGTIRRHYRQPREKPDVKQSFGISEVSPVLEYYAARAGIEYSRVSLGHQTFSFDLALALLRSPLGMETSDGQVWRPVIPWVRDDGFCAVLMREAIPYQEACHLFGFDIPAAKPSVPKRIKRHLARGRTALFGKEAEVRQLNQYDRVHEAILADGATSFSTAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKANCLIWDVDYDLVVFDIKKELRSWNGEVYLSVLNELHGSPANLDVQTASNLDLAKVRNGKLIQNLSQEFARDVFELMKHDERVKEEIGFYNPEGWVNDDGNPVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPQNSNPDRFRIRFREPKDLMTVQPQELAGAAVRRYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQRFAEIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIAAHWKTLQEYPLLQAAPTQAMVIDDGDALFDRHPEVERYDTLFVERMIVDAKHGQMGIGCVVNAIVWHNLLWLNRGSILAELRAMEPISKVLEAIHWMEHDLPKSQMPMIASRLEEIIDSIKMNGKSVEWANAAITEFRNACPVAPKFWWQGGFQGEGRIPRHRLGSYNEPIQVTTAMDIAREEWVELFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKAEFLKTGEDHRGKKVTSEQDAGLAAYLFAEEDIHNRIKASGMYLEIYAELAKLVFDRELSLEPPRNPDGSVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVVVEDTLVRLVGSTPNSASWLGIVDIPDGQYRLEHGLLATGDDDETPPQQTTLALPAVNGFEQRLKDMTLKQQDRQRIEAELKLFQAQVGQRVTIKPVTYHNPKTRQDEPAAEVFVQGKSEPLCWISRAHVSAVTRELTGILVSNGKYSLTAVCTLPQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326724_0002425

Overview

Ecosystem & Geography

Associated Families

Sequences