Scaffold Ga0326723_0053161

Overview

Basic Information

• Taxon OID: 3300034090
• Scaffold ID: Ga0326723_0053161
• Source Dataset Name: Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1715
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.3286
  • Long. (^o): -76.4792
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017692	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326723_0053161_983_1615	F017692	GAG	VGLCVVSLVLALSGSAAAQTGDKNKTVRITNQQGAAAEVYINFAADSVLKPSDLPFCRVTGPLNCQFTLAARSSQDFPNPQAKYLNMAMAFNAPVTCGSTKAEVLVNNPKWFDILDVSVVDGFNEKIQINLTPTNGKMTQLGPPVGKLGNQKILGVFPYACTICAGIKNAPCGDAGKGECKLGTESNPDVPCQYQMNEPNGLVEVLLLPK