Scaffold Ga0326723_0016587

Overview

Basic Information

• Taxon OID: 3300034090
• Scaffold ID: Ga0326723_0016587
• Source Dataset Name: Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2975
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.3286
  • Long. (^o): -76.4792
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001574	Metagenome / Metatranscriptome	669	Y
F002616	Metagenome / Metatranscriptome	543	Y
F031982	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326723_0016587_1724_2173	F001574	N/A	MSQIEVVRQNKWDELMSSLKFSILALDGLRAGGLVRTAAEKFVGAWLACFLVMARGDFLAAFSLEHARLASVCGIVGAAVSVALLAQMDRTTNSVARQATISAFATFIGDVFAHPSHFPPQWAEPLVTAVVSAGIATALWHAKRWAKSL
Ga0326723_0016587_393_539	F031982	AGGAG	MMKFLSTLEEEDLLTYEVSDDALETAGGNEIARNYTLAACTGLSVCPG
Ga0326723_0016587_580_759	F002616	GGAGG	VSNSFLNRTSRVAIAGRIAECRRPQNWNELTIPGDYHLPFGKAEAQAKAARWLWQSSII