Scaffold Ga0373912_0013104

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0373912_0013104

Scaffold Ga0373912_0013104

Overview

Basic Information
Taxon OID	3300034088 Open in IMG/M
Scaffold ID	Ga0373912_0013104 Open in IMG/M
Source Dataset Name	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1887
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location
Location Name	USA: Oak Ridge, Tennessee
Coordinates	Lat. (^o)	36.0103	Long. (^o)	-84.2696	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048040	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373912_0013104_1251_1613	F048040	GGA	LISEAEILHIVSEIHQYDVVLMELKDGTVFGIAKGGESIPIYFRTRETVRAPADRRVLLQNAVESRGGGHVDSVTLDTLLNGLRGMKIRHVWLETRTEPRHEMAFLDLKELQTFLRKHEA

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