NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0095354

Scaffold Ga0335020_0095354


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0095354 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1520
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001433Metagenome695Y
F028087Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0095354_1323_1520F028087N/AKHEITKKYGIKAWEEIQGIKARKQWEDRQDKYLEQNDRRVMKSVMALCYMFSAWIAYECTWGRWK
Ga0335020_0095354_709_1332F001433GAGMEINMPLNNSEDTLSKILAYVDSPFKLFAVILMAILVFGAWAFYENKELIVGTYKESQKLPSIAEDRVDDVAVHLFKTTDATVVTIFKVNPLFGTRIQYRAYTKTGRDKTNDGLDVGLFTSNQANNQDVVALMAGDIPCGGYKAPQSEIGLWYIEKGMTFGCRISVPPDPSRFIGQITVGWDNSPAELEQAKAMLFIAATMLSRSKK

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