NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0073526

Scaffold Ga0335020_0073526


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0073526 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011761Metagenome / Metatranscriptome287Y
F057213Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0073526_1098_1754F057213N/ALTALSQASGQQFESVEAALAYVARTSSQNLGGNEQPVEQQQQKGRIGRPRVADNDIREQFTKLQADLQKKDTALRQKELDTDILRNMGDKFDPDLQDYAMQKIKSNIQFSADGSSRIVNAKGQERYGSDGNPLTLQGLIQEVAQGNPKLLKQSNASSGSGMRAGQGNFAGAPNDQMPDYSKDPAAFNAWAAKNGYGKGVGLRGTKVSATVQGDSRKIL
Ga0335020_0073526_18_1076F011761AGGAGMAYVLGGSNNEADGFTFAIANFALRAMHEATGLVNYTQTVTPNQGNTYLVPQFAPITYADYNPAGSGGTWGTGNAVVQNPALGQGSIVATPAVATTAFDIFYAWTTSFELAASLGAELGESYAEKVDIRVAAAFLGFKATPGNSLYSPTPADGFARPTELGAMELLMAGLPATTAGWTDGFSANSVLQLIRNVKQNYKRARLPGTPIIVLDANGDAATVSATPAGQDGSSLNRLLAELTGGAVSQAGGSNLSALGNELLSTGKIESVYGCMVAFTTFLPSANRIMLGQGSASPVLVGGYMHETAVFTVIKEGLEIKMGTVPGGLQNWLTGVAYFGSGVADPRRGGAVNILQA
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Institute for Fundamental Biomedical Research
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