NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0059902

Scaffold Ga0335020_0059902


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0059902 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1986
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017131Metagenome242Y
F048773Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0059902_125_475F017131AGGAGGMAFPGTYNFNYYRGDRYEFVIRPKTANGGAFDLTGYSANFFVANARGEGKTQYEMQAVVDGSADTVTCTILPGAGEELAAGTYVYDVQIDSGATLVYTLLTGSITVTDDITGADDS
Ga0335020_0059902_1563_1985F048773AGGTGGMPTVFDSDGKAAYVYNVADDTWYQVSGKTDISGTFEWTGLHTHLSNLTATENFTAKKGTNNFLNPSARDAAITSPVAGTVCLIRQNSGGTTINEIQYYDGSSWRTLIPSQTGNAGKVLQTDGIITSWQSAPDSTVTSLLFM

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