NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0058690

Scaffold Ga0335020_0058690


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0058690 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2008
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024726Metagenome / Metatranscriptome204N
F073125Metagenome / Metatranscriptome120N
F104442Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0058690_11_805F024726N/AVVLYKTLITEWRFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQKENLKQGFRFITNPIDLALLMFEHELLLAEIKSIRQDILTPLTNPLSLIDLNNLDEQSGTNPTILKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISVFLALGFFVQCSMVTANTIMRWRTERDEKIREQERTRFRVNRIERSHPLIRETVLPTCENCSEKREMYRTRPPSKVIKRSHRNKGHIPSHLRGSKLDMNQ
Ga0335020_0058690_1659_2006F104442N/AMDSGAEHIRETRAKILAAKKEIKEYLRLPEDARGLLILTHGKGNVIFLSQENLPTGAERKYTWEEHSGQYTTQLITVYDYESMYMTAVDVDGNESATFVCLCLAQEKGVRFALERN
Ga0335020_0058690_926_1189F073125N/AMPDIEMNPLLFKAFSQPTTSHEETLFQRIQPYASLRKSKPPVPPRLGTDPLKRRFGENGSLKDVSEPVYQVSVAYDASTQRAKIQTT
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