Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0038643 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2570
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F024551	Metagenome	205	Y
F042864	Metagenome	157	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

821

Metagenome / Metatranscriptome

472

Metagenome

205

Metagenome

157

Protein ID	Family	RBS	Sequence
Ga0335020_0038643_1009_1266	F024551	N/A	MLIIKPDSLPRLWWLFPWSVARQLHKNAVALQALADKQSTTNMVLKAEVVRLAHSREHWISKHDRAYAVAMHNERVIREMEERSR
Ga0335020_0038643_1349_1633	F000957	N/A	MSSFRHLDGMVAMLSEVYEINERIMTGDICSAKTAIASGRMKKLLHHYHEALHEDGASKVSLQAYVAAGGWVGITYSYELDGFEVAGSQVPRRV
Ga0335020_0038643_358_696	F042864	N/A	MSTPTKPKAELVSDKAMTELLKRKAIDFRKAASLKDRDGCVKGLGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTILCWHLA
Ga0335020_0038643_707_976	F003714	N/A	MPNAHHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRTWLDLTNTQWVNLNRRGPYRRHAK

Protein ID

Family

RBS

Sequence

Ga0335020_0038643_1009_1266

N/A

MLIIKPDSLPRLWWLFPWSVARQLHKNAVALQALADKQSTTNMVLKAEVVRLAHSREHWISKHDRAYAVAMHNERVIREMEERSR

Ga0335020_0038643_1349_1633

N/A

MSSFRHLDGMVAMLSEVYEINERIMTGDICSAKTAIASGRMKKLLHHYHEALHEDGASKVSLQAYVAAGGWVGITYSYELDGFEVAGSQVPRRV

Ga0335020_0038643_358_696

N/A

MSTPTKPKAELVSDKAMTELLKRKAIDFRKAASLKDRDGCVKGLGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTILCWHLA

Ga0335020_0038643_707_976

N/A

MPNAHHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRTWLDLTNTQWVNLNRRGPYRRHAK

NMPFamsDB