Scaffold Ga0335020_0033842

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0033842
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2780
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034177	Metagenome / Metatranscriptome	175	Y
F040097	Metagenome / Metatranscriptome	162	Y
F072320	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0033842_1204_1398	F034177	AGG	MIQEQIKVIEARLEFLKTDTTKWVSAFAQPDGCTPYNHGNYFRKLERNRLKTKLKSLQKKLLKN
Ga0335020_0033842_1547_1735	F072320	N/A	MNALSTTQIRAEIVELINAGTLNVPKIIKFFKDFRPGANPTTVKTEAKELVAQVRSTIKRRK
Ga0335020_0033842_298_684	F040097	GAG	MKKEARVEFGITITKPWSKEMYAHNEELAEVVKEKVHQMWVDALKEAMEDYRDEDELGNLYSELDWGQASDEMTRIQKAITYYSYCNQSIEEVADEVEETLEDMPLFQLKELVEELEIKLDKGFIGFN