Scaffold Ga0335020_0026828

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0026828
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3194
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013414	Metagenome / Metatranscriptome	271	Y
F038241	Metagenome / Metatranscriptome	166	Y
F053291	Metagenome / Metatranscriptome	141	N
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0026828_140_562	F013414	AGGCGG	MKTREIKVAEQLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWEANRYNDELDTDDGIYNSGMTSEGLFLANELNQTLNKLIKKYKWENIKLPADPDKIIRRLPKVEEQSYRHSWLHDTSKQYPVLISPPFI
Ga0335020_0026828_1749_1973	F084239	AGG	MRDIMGQRNFMSRSSRFMEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNETNERVYG
Ga0335020_0026828_2052_2228	F038241	GGAGG	MLGYEVYDQEEMVNAIHDAKLFYIMKSGVEQVDKDPLIEGLLKAQDFLQGLWAEGYFD
Ga0335020_0026828_2222_2368	F053291	GGTGG	MITTQELIDYMYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC