NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0020026

Scaffold Ga0335020_0020026


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0020026 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3794
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003542Metagenome / Metatranscriptome480Y
F017998Metagenome237Y
F038234Metagenome166Y
F062757Metagenome130N
F084218Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0020026_1551_1946F003542N/AMFVILGIIKLKDMSKVNFDYDLFDEKIGWDSQNKKYLIRVYEYLVFEMDNNPAPTWVGIMRKMLGSNPKDVNPSSYYSSVRRCLKEIGVCSFDSTKRCMVKGRNWDRFTSNENWDWFIMRTGSCEYSTIVK
Ga0335020_0020026_2786_3025F017998N/AMNLERLDLEKYEVLELERNSTIADPLYQQWMSELKVSSSYSDREGIIRANELNNQYTYSVLAGNKSTKFSVSSILSVLK
Ga0335020_0020026_3038_3313F038234N/AMLTIKNIDSLKGTYVGHWKIHYVANLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETDNRHYLPIECIKNSYTFIRFLIDELI
Ga0335020_0020026_3318_3653F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYLFDIHCNGPIGNRIDGCMISLNRIGELQRHMFKPDTTAYFLYYNGERTDVCVTKDWILNPDNFISQLKYIINEYHNKR
Ga0335020_0020026_526_714F084218GGAGGMRHEAGITAKVHALCAIHREDAEALYSEVKAVAGTDYTDYDSKGRGLKYRAIDGWFKPYIGE
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