Scaffold Ga0335020_0019934

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0019934
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3806
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F007468	Metagenome / Metatranscriptome	350	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0019934_2069_2266	F007468	GGAGG	MTTQTKSSYFLEYMKIYLISLNQDLEDNYNVQSKINIQGQIMATEHLLSVATDIMNKSNEMVYHE
Ga0335020_0019934_238_639	F036238	AGGCGG	MGDRANFGFRQSSGETIMLYGHWAGDNMLGNLASAVEAARSRWKDESYATRIVVSHLVGDQWHETTGWGLTVNSILDNEHKIPLIDWSTGTFSLHEEAPWSESTEYKVRGMQDEPIFKMGLDAFVDKYARATV
Ga0335020_0019934_3019_3165	F000441	AGGAGG	MKTSDRYVDDQLSKAQALLWSGSLHEVDEAHNIISNLIKDRIEQTDLS