NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0014258

Scaffold Ga0335020_0014258


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0014258 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4676
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069670Metagenome123N
F078234Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0014258_3739_4467F078234GAGMSERENKWNPHEYNLKLIGEHNWKWNVTIVLRVKFSERHDLKRLNKDALKHIHQIGSQLYPKEIKGYQKSFLGVCTGEIQESSGLLHHHAILGELWKPNLWFNNSIADLQWSESREFRLKELDHRELLKERIQKKLEGSEFESTYLGKKLEIAKNPVVEIYQKEIESGGSWRGYIVKEDSNAYWSPYYHELVRKINQVNQENGVIPDELLHLKCWSKPRKDADFTTRLKLLLEQRGGDTNEK
Ga0335020_0014258_983_1735F069670GGAVQRAKNHLQDTGAAIFVTISNSSGSRGHKVYAGDPLTLDGTSKTLMAWSVLGRERHRWDKIRGQLHGLPYPKSSENPSKVASGCPRQPTDIQNAPHTRGKAYSIGMTSLGVQVNGLKSCLDRGSSPPGLIWNVQRTETSTERKLAWFVVRKIAKLFWDNCKVMHPRKKLGGIFNLVRRWIGRGVNISDIISNFQISLEKMHGLCVDFQLMRGEPDLRFNVGSTITLTDRRLCRLYSSNQLVHWSDCVVQT
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