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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0006999 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7034 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (10.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003691 | Metagenome / Metatranscriptome | 473 | Y |
| F004696 | Metagenome | 427 | Y |
| F005299 | Metagenome / Metatranscriptome | 405 | Y |
| F008359 | Metagenome / Metatranscriptome | 334 | Y |
| F017485 | Metagenome | 240 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0006999_1514_1885 | F003691 | N/A | MNNRMTNEFNQFTEVSYNTSRNERPIYKNFAASKMSQCVKPQSIVEFKDFMGRTHKVAVRNNTELKKQMKFFAELKKESATIKQIISQYPIKLGKVEKRFIAECKRELKQFGLTKKAIDIVLG |
| Ga0335020_0006999_1936_2178 | F008359 | N/A | MKSKLNTKSLYEIKKVKRVMRMKSEGFEPTSFEVFKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKVK |
| Ga0335020_0006999_2277_2672 | F005299 | N/A | MNNTPTHNPHTFDGFDSPRDIWESKVGYDSANKKMIAKVYKHLYNVMEFTTKPSWVKIITEMLIEDNRLGKVSVNGYYSTIRTNLKDIGVIQYNGRKGLSKGKNWDRFFGDEDWSWFITNTNSGGYGTIVK |
| Ga0335020_0006999_413_571 | F017485 | N/A | MNNELKTKDIVEGITFILMCIAIIGMVCVLYEVNELKGLSKGASNFRIVNRK |
| Ga0335020_0006999_4985_5170 | F004696 | GAG | MKKIKSLQDGKPKWAASKQLDEIRSAISLLERYNEMSAEDMENEDEYLKQIFEQHPAKAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |