Scaffold Ga0335020_0006133

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0006133
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7604
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F008814	Metagenome / Metatranscriptome	327	Y
F016396	Metagenome / Metatranscriptome	247	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0006133_2738_2959	F008814	N/A	MAERLTILEEIIKDIGEELYQKWYNGLAIEDRTEETSKAMATNAGETAVWVIQTFMNKFNAAAEELKPDDSNG
Ga0335020_0006133_311_460	F001280	GGCGG	MCVECGCESVGSETGIIPVAITDVSRDGEAGLTLSMSSTPEQTRQFINE
Ga0335020_0006133_3921_4100	F016396	GAGG	MRKSERLRLLEMQVVRLEMMVELYTQSLTNLLESQGLHSPTQLDAGKWYKAKLDNLDKE
Ga0335020_0006133_5061_5360	F077310	AGG	MTLDANSITIVILASILSGMGTALVNGIKESKKEKARRTEREQDLLKMDLKDLEIKLYKLEKDLAEWRDKYYNALQELIEVKAELEDTLIKLTHIGLHD
Ga0335020_0006133_5401_5637	F000671	GAGG	MEKILCYCCNKTKNKLNVRKSILIPINLFMCETCITSKFEPRWVVILAGRQLGSDAVKEFIIKKRYIGNDITASELLV
Ga0335020_0006133_5809_6138	F000473	AGG	MEFINKDKDHFKHGINQWTGEPNKPVFYTQEMSKRIREIKKPDMNLQMDIAQYPEFLAVRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRNN