Scaffold Ga0335020_0006123

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0006123
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7613
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0006123_4177_4557	F001725	N/A	MAAISNGTTCIYGVAGTVTNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELTVEGIAKTSTMPVLGAALSFTVNTASAYPAGSASASFVGTITKIDDKGSNKGFTAVTITAIDYEGITPA
Ga0335020_0006123_4584_5015	F001055	AGG	MGTKSIRHIVEATLATYLSTQTGLTTVAFLTGDNAAIQTLPKAVVLCESARNPADLPEGEGNFSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDAACYDVTVVSEDEGIDERSWATSFAFDVLVVLPA
Ga0335020_0006123_6938_7363	F001298	GAGG	MGAFFVPPTNPGKYRMSLYGTELTNDAKEMIADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYMERTQYSVRLPAVTASWSQPDGSMGASAALLSAGVPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ