Scaffold Ga0335020_0005568

Overview

Basic Information

• Taxon OID: 3300034082
• Scaffold ID: Ga0335020_0005568
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8023
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0005568_1031_1261	F039640	AGG	MNIEDLLKQSQKTAGEIDIVQYTNLILLEACRLIKDTPTTAAFTTFDQAVAETQRADCFKQVYNQIVKNIEDGNNS
Ga0335020_0005568_2370_2666	F061859	GGA	MTIEVLLIIIAVAIIACYLVFRWQDSVINTAIPPYQEPVKPDMAEQWVAATKADTFDNIDSWNAKVGDKIWHKEAAAELEPTPINPQAAWPFPVGRQP
Ga0335020_0005568_3353_3586	F039639	GGA	MNIDREFVKWFYEEHYPEQGSNRRQVYGTTANTTNINVIDYWMREAFKAGAQAAANNYEVNALEQFEAFDIKRNYPL
Ga0335020_0005568_7544_7735	F080054	GGAG	MSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTIPRLFMPKTNI